Illumina sequencing of Arima HiC library of Neodiprion lecontei: eony... - SRA

SRX13257718: Illumina sequencing of Arima HiC library of Neodiprion lecontei: eonymph male head and thorax
1 ILLUMINA (Illumina NovaSeq 6000) run: 143.7M spots, 43.4G bases, 13.8Gb downloads

Design: Tissue was crosslinked using the Arima HiC low input protocol, and proximity ligation was performed using Arimas HiC Kit. After proximity ligation, the DNA was sheared using a Diagenode Bioruptor and then size-selected to enrich for DNA fragments of 200-600bp. An Illumina library was prepared from the sheared and size-selected DNA using the Swift Accel NGS 2S Plus kit. The final Illumina HiC library was sequenced on a NovaSeq 6000.

Submitted by: United States Department of Agriculture

Study: Genome sequencing of Neodiprion lecontei

PRJNA784628 • SRP348499 • All experiments • All runs

show Abstracthide Abstract

Long-reads were used to generate a whole genome assembly of Neodiprion lecontei, the redheaded pine sawfly.

Sample: Neodiprion lecontei male eonymph

SAMN23497074 • SRS11179868 • All experiments • All runs

Organism: Neodiprion lecontei

Library:

Name: N_lec

Instrument: Illumina NovaSeq 6000

Strategy: Hi-C